after parse:
########################
#    PARGENES v1.2.0   #
########################

2024-08-03 17:18:52.445250
ParGenes was called as follow:
/public2/home/yaoxin02/.conda/envs/pargenes/bin/pargenes-hpc.py -a ../04_filtered_alignment_nuc -o gene_trees -c 12 -d nt -R --model GTRGAMMA -b 100 --continue --scheduler split

[0:00:00] end of MSAs initializations
Binaries directory: /public2/home/yaoxin02/.conda/envs/pargenes/bin/pargenes_src/../pargenes_binaries
[0:00:00] end of anlysing parsing results
[Error] ParGenes failed to analyze all MSAs.
Writing report file in /public2/home/yaoxin02/data/hoya/scng_analysis/captus-analysis-hoya/captus_alignments_0614_minsam050/06_phylogeny_nuc_coale/gene_trees/report.txt
When reporting the issue, please always send us this file.