RAxML-NG v. 1.2.1-adaptive released on 11.04.2024 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth, Julia Haag, Anastasis Togkousidis. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Silver 4216 CPU @ 2.10GHz, 32 cores, 503 GB RAM RAxML-NG was called at 04-Aug-2025 14:30:15 as follows: /opt/bifxapps/raxml-ng-adaptive/bin/raxml-ng-adaptive --all --msa gtdbtk.bac120.user_msa.fasta --model LG+G8+F --prefix Proteo_raxml --threads 62 --seed 2 --bs-trees 500 --log debug Analysis options: run mode: ML tree search + bootstrapping (adaptive) (Felsenstein Bootstrap) start tree(s): adaptive bootstrap replicates: parsimony (500) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON logLH epsilon: general: 10.000000, brlen-triplet: 1000.000000 fast spr radius: AUTO spr subtree cutoff: 1.000000 fast CLV updates: ON branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (62 threads), thread pinning: OFF RBA partial loading: OFF |noname| |LG+FC+G8m| || [00:00:00] Reading alignment from file: gtdbtk.bac120.user_msa.fasta Failed to load as IPHYLIP: Unable to parse PHYLIP file: gtdbtk.bac120.user_msa.fasta (LIBPLL-231): Invalid number of sequences in header Failed to load as PHYLIP: Unable to parse PHYLIP file: gtdbtk.bac120.user_msa.fasta (LIBPLL-231): Invalid number of sequences in header [00:00:00] Loaded alignment with 2136 taxa and 5035 sites [00:00:00] Extracting partitions... [00:00:00] Checking the alignment... WARNING: Sequences GCF_013374815.1_ASM1337481v1_genomic.fna and GCF_022354085.1_ASM2235408v1_genomic.fna are exactly identical! WARNING: Sequences GCF_016584425.1_ASM1658442v1_genomic.fna and GCF_017896245.1_ASM1789624v1_genomic.fna are exactly identical! WARNING: Sequences GCF_018406605.1_ASM1840660v1_genomic.fna and GCF_018406645.1_ASM1840664v1_genomic.fna are exactly identical! WARNING: Sequences GCF_947250465.1_ilPolCalb1.Wolbachia_sp_2.1_genomic.fna and GCF_947250485.1_ilApoCrat1.Wolbachia_sp_1.1_genomic.fna are exactly identical! WARNING: Sequences GCF_947250515.1_ilCatPine1.Wolbachia_sp_1.1_genomic.fna and GCF_947250525.1_ilColCroc2.Wolbachia_sp_1.1_genomic.fna are exactly identical! WARNING: Sequences GCF_947250515.1_ilCatPine1.Wolbachia_sp_1.1_genomic.fna and GCF_947250545.1_ilEryTage1.Wolbachia_sp_1.1_genomic.fna are exactly identical! WARNING: Sequences GCF_947250565.1_iyAndHaem1.Wolbachia_sp_1.1_genomic.fna and GCF_947250795.1_iyNomFabr1.Wolbachia_sp_1.1_genomic.fna are exactly identical! WARNING: Sequences GCF_947250655.1_ilWatBina1.Wolbachia_sp_1.1_genomic.fna and GCF_947250725.1_ilParAegt1.Wolbachia_sp_1.1_genomic.fna are exactly identical! WARNING: Sequences GCF_947250655.1_ilWatBina1.Wolbachia_sp_1.1_genomic.fna and GCF_947251655.1_ilPheTrem1.Wolbachia_sp_1.1_genomic.fna are exactly identical! WARNING: Sequences GCF_947250655.1_ilWatBina1.Wolbachia_sp_1.1_genomic.fna and GCF_947251805.1_ilCelArgi3.Wolbachia_sp_1.1_genomic.fna are exactly identical! WARNING: Sequences GCF_947250755.1_ilAgrStra1.Wolbachia_sp_1.1_genomic.fna and GCF_947251735.1_ilEndFlam1.Wolbachia_sp_2.1_genomic.fna are exactly identical! WARNING: Sequences GCF_947251605.1_ilEmmMono1.Wolbachia_sp_1.1_genomic.fna and GCF_947251625.1_ilPhaBuce1.Wolbachia_sp_2.1_genomic.fna are exactly identical! WARNING: Duplicate sequences found: 12 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /mnt/bigdata/linuxhome/kmyers/Jacob_RAxML/Proteo_raxml.raxml.reduced.phy [00:00:01] Compressing alignment patterns... Alignment comprises 1 partitions and 5035 patterns Partition 0: noname Model: LG+FC+G8m Alignment sites / patterns: 5035 / 5035 Gaps: 4.39 % Invariant sites: 0.14 % [00:00:01] Adaptive mode: Predicting difficulty of the MSA ... [02:22:02] Predicted difficulty: 0.31 NOTE: Binary MSA file created: Proteo_raxml.raxml.rba Recommended threads (response/balanced/throughput): 36 / 14 / 8 Parallelization scheme autoconfig: 2 worker(s) x 31 thread(s) NOTE: Per-rate scalers were automatically enabled to prevent numerical issues on taxa-rich alignments. NOTE: You can use --force switch to skip this check and fall back to per-site scalers. [02:22:02] Generating a RANDOM starting tree, seed: 1505335290 [02:22:02] Generating 4 random starting tree(s) with 2136 taxa [02:22:02] Generating a RANDOM starting tree, seed: 1738766719 [02:22:02] Generating a RANDOM starting tree, seed: 190686788 [02:22:02] Generating a RANDOM starting tree, seed: 260874575 [02:22:02] Generating a RANDOM starting tree, seed: 747983061 [02:22:02] Generating 8 parsimony starting tree(s) with 2136 taxa [02:23:28] Generated a PARSIMONY starting tree, seed: 906156498, score: 807473 [02:24:54] Generated a PARSIMONY starting tree, seed: 1502820864, score: 808940 [02:26:20] Generated a PARSIMONY starting tree, seed: 142559277, score: 807590 [02:27:46] Generated a PARSIMONY starting tree, seed: 1261608745, score: 807446 [02:29:12] Generated a PARSIMONY starting tree, seed: 1380759627, score: 807382 [02:30:37] Generated a PARSIMONY starting tree, seed: 2127304342, score: 807931 [02:32:03] Generated a PARSIMONY starting tree, seed: 635050179, score: 807796 [02:33:29] Generated a PARSIMONY starting tree, seed: 582691149, score: 808060 Parallel reduction/worker buffer size: 1 KB / 0 KB Initial model parameters: Partition: noname Rate heterogeneity: GAMMA (8 cats, mean), alpha: 1.000000 (ML), weights&rates: (0.125000,0.065280) (0.125000,0.208627) (0.125000,0.376074) (0.125000,0.577429) (0.125000,0.830101) (0.125000,1.169899) (0.125000,1.693147) (0.125000,3.079442) Base frequencies (empirical): 0.098835 0.062669 0.032068 0.053157 0.007212 0.035150 0.065120 0.059930 0.019023 0.079091 0.107695 0.062437 0.025842 0.037935 0.029996 0.049175 0.045774 0.006189 0.025261 0.097442 Substitution rates (model): 0.425093 0.276818 0.395144 2.489084 0.969894 1.038545 2.066040 0.358858 0.149830 0.395337 0.536518 1.124035 0.253701 1.177651 4.727182 2.139501 0.180717 0.218959 2.547870 0.751878 0.123954 0.534551 2.807908 0.363970 0.390192 2.426601 0.126991 0.301848 6.326067 0.484133 0.052722 0.332533 0.858151 0.578987 0.593607 0.314440 0.170887 5.076149 0.528768 1.695752 0.541712 1.437645 4.509238 0.191503 0.068427 2.145078 0.371004 0.089525 0.161787 4.008358 2.000679 0.045376 0.612025 0.083688 0.062556 0.523386 5.243870 0.844926 0.927114 0.010690 0.015076 0.282959 0.025548 0.017416 0.394456 1.240275 0.425860 0.029890 0.135107 0.037967 0.084808 0.003499 0.569265 0.640543 0.320627 0.594007 0.013266 0.893680 1.105251 0.075382 2.784478 1.143480 0.670128 1.165532 1.959291 4.128591 0.267959 4.813505 0.072854 0.582457 3.234294 1.672569 0.035855 0.624294 1.223828 1.080136 0.236199 0.257336 0.210332 0.348847 0.423881 0.044265 0.069673 1.807177 0.173735 0.018811 0.419409 0.611973 0.604545 0.077852 0.120037 0.245034 0.311484 0.008705 0.044261 0.296636 0.139538 0.089586 0.196961 1.739990 0.129836 0.268491 0.054679 0.076701 0.108882 0.366317 0.697264 0.442472 0.682139 0.508851 0.990012 0.584262 0.597054 5.306834 0.119013 4.145067 0.159069 4.273607 1.112727 0.078281 0.064105 1.033739 0.111660 0.232523 10.649107 0.137500 6.312358 2.592692 0.249060 0.182287 0.302936 0.619632 0.299648 1.702745 0.656604 0.023918 0.390322 0.748683 1.136863 0.049906 0.131932 0.185202 1.798853 0.099849 0.346960 2.020366 0.696175 0.481306 1.898718 0.094464 0.361819 0.165001 2.457121 7.803902 0.654683 1.338132 0.571468 0.095131 0.089613 0.296501 6.472279 0.248862 0.400547 0.098369 0.140825 0.245841 2.188158 3.151815 0.189510 0.249313 [02:33:29] Data distribution: max. partitions/sites/weight per thread: 1 / 163 / 26080 thread# part# start length weight 0 0 4890 145 23200 1 0 4727 163 26080 2 0 4564 163 26080 3 0 4401 163 26080 4 0 4238 163 26080 5 0 4075 163 26080 6 0 3912 163 26080 7 0 3749 163 26080 8 0 3586 163 26080 9 0 3423 163 26080 10 0 3260 163 26080 11 0 3097 163 26080 12 0 2934 163 26080 13 0 2771 163 26080 14 0 2608 163 26080 15 0 2445 163 26080 16 0 2282 163 26080 17 0 2119 163 26080 18 0 1956 163 26080 19 0 1793 163 26080 20 0 1630 163 26080 21 0 1467 163 26080 22 0 1304 163 26080 23 0 1141 163 26080 24 0 978 163 26080 25 0 815 163 26080 26 0 652 163 26080 27 0 489 163 26080 28 0 326 163 26080 29 0 163 163 26080 30 0 0 163 26080 [02:35:50] [worker #0] Generated a PARSIMONY starting tree, seed: 1505335290, score: 807650 [02:38:09] [worker #0] Generated a PARSIMONY starting tree, seed: 1738766719, score: 807935 [02:40:29] [worker #0] Generated a PARSIMONY starting tree, seed: 190686788, score: 807537 [02:42:49] [worker #0] Generated a PARSIMONY starting tree, seed: 260874575, score: 807679 [02:45:09] [worker #0] Generated a PARSIMONY starting tree, seed: 747983061, score: 807996 [02:47:29] [worker #0] Generated a PARSIMONY starting tree, seed: 906156498, score: 807473 [02:49:49] [worker #0] Generated a PARSIMONY starting tree, seed: 1502820864, score: 808940 [02:52:09] [worker #0] Generated a PARSIMONY starting tree, seed: 142559277, score: 807590 [02:54:29] [worker #0] Generated a PARSIMONY starting tree, seed: 1261608745, score: 807446 [02:56:49] [worker #0] Generated a PARSIMONY starting tree, seed: 1380759627, score: 807382 [02:59:09] [worker #0] Generated a PARSIMONY starting tree, seed: 2127304342, score: 807931 [03:01:29] [worker #0] Generated a PARSIMONY starting tree, seed: 635050179, score: 807796 [03:03:49] [worker #0] Generated a PARSIMONY starting tree, seed: 582691149, score: 808060 [03:06:09] [worker #0] Generated a PARSIMONY starting tree, seed: 149585093, score: 807754 [03:08:28] [worker #0] Generated a PARSIMONY starting tree, seed: 2039335037, score: 808453 [03:10:48] [worker #0] Generated a PARSIMONY starting tree, seed: 820715049, score: 808070 [03:13:08] [worker #0] Generated a PARSIMONY starting tree, seed: 693014654, score: 807917 [03:15:28] [worker #0] Generated a PARSIMONY starting tree, seed: 2122498773, score: 808185 [03:17:48] [worker #0] Generated a PARSIMONY starting tree, seed: 1809302367, score: 807780 [03:20:08] [worker #0] Generated a PARSIMONY starting tree, seed: 591232730, score: 807604 [03:22:28] [worker #0] Generated a PARSIMONY starting tree, seed: 1281246002, score: 807855 [03:24:48] [worker #0] Generated a PARSIMONY starting tree, seed: 1194903572, score: 807848 [03:27:08] [worker #0] Generated a PARSIMONY starting tree, seed: 1820868569, score: 807925 [03:29:28] [worker #0] Generated a PARSIMONY starting tree, seed: 396476315, score: 807508 [03:31:48] [worker #0] Generated a PARSIMONY starting tree, seed: 853559767, score: 808120 [03:34:07] [worker #0] Generated a PARSIMONY starting tree, seed: 1910751391, score: 807656 [03:36:27] [worker #0] Generated a PARSIMONY starting tree, seed: 1826393210, score: 807538 [03:38:47] [worker #0] Generated a PARSIMONY starting tree, seed: 682319630, score: 808043 [03:41:07] [worker #0] Generated a PARSIMONY starting tree, seed: 221122296, score: 807472 [03:43:25] [worker #0] Generated a PARSIMONY starting tree, seed: 96423063, score: 807969 [03:45:45] [worker #0] Generated a PARSIMONY starting tree, seed: 1385108013, score: 807836 [03:48:06] [worker #0] Generated a PARSIMONY starting tree, seed: 1726457586, score: 807383 [03:50:26] [worker #0] Generated a PARSIMONY starting tree, seed: 1835189782, score: 807344 [03:52:45] [worker #0] Generated a PARSIMONY starting tree, seed: 1575794802, score: 807426 [03:55:06] [worker #0] Generated a PARSIMONY starting tree, seed: 1987332161, score: 807748 [03:57:26] [worker #0] Generated a PARSIMONY starting tree, seed: 435689196, score: 807376 [03:59:47] [worker #0] Generated a PARSIMONY starting tree, seed: 334467652, score: 808021 [04:02:08] [worker #0] Generated a PARSIMONY starting tree, seed: 1342669377, score: 807235 [04:04:28] [worker #0] Generated a PARSIMONY starting tree, seed: 578248473, score: 807788 [04:06:48] [worker #0] Generated a PARSIMONY starting tree, seed: 1596076397, score: 807456 [04:09:08] [worker #0] Generated a PARSIMONY starting tree, seed: 575945357, score: 807428 [04:11:29] [worker #0] Generated a PARSIMONY starting tree, seed: 558069167, score: 807829 [04:13:49] [worker #0] Generated a PARSIMONY starting tree, seed: 83642928, score: 808137 [04:16:09] [worker #0] Generated a PARSIMONY starting tree, seed: 1158636506, score: 807526 [04:18:29] [worker #0] Generated a PARSIMONY starting tree, seed: 707654260, score: 807472 [04:20:49] [worker #0] Generated a PARSIMONY starting tree, seed: 2122977965, score: 808137 [04:23:08] [worker #0] Generated a PARSIMONY starting tree, seed: 1979351556, score: 807770 [04:24:43] [worker #0] Generated a PARSIMONY starting tree, seed: 1400668914, score: 807863 [04:26:27] [worker #0] Generated a PARSIMONY starting tree, seed: 2097993090, score: 807838 [04:28:47] [worker #0] Generated a PARSIMONY starting tree, seed: 1641170275, score: 807839 [04:30:58] [worker #0] Generated a PARSIMONY starting tree, seed: 1991901644, score: 808193 [04:32:32] [worker #0] Generated a PARSIMONY starting tree, seed: 1231755445, score: 807467 [04:34:06] [worker #0] Generated a PARSIMONY starting tree, seed: 688590199, score: 807978 [04:35:39] [worker #0] Generated a PARSIMONY starting tree, seed: 1665286566, score: 807699 [04:37:13] [worker #0] Generated a PARSIMONY starting tree, seed: 1628231760, score: 807809 [04:38:47] [worker #0] Generated a PARSIMONY starting tree, seed: 1542149966, score: 807888 [04:40:20] [worker #0] Generated a PARSIMONY starting tree, seed: 1428554309, score: 807900 [04:42:38] [worker #0] Generated a PARSIMONY starting tree, seed: 1307141323, score: 807579 [04:44:58] [worker #0] Generated a PARSIMONY starting tree, seed: 76985948, score: 807761 [04:47:18] [worker #0] Generated a PARSIMONY starting tree, seed: 1649676605, score: 807362 [04:49:39] [worker #0] Generated a PARSIMONY starting tree, seed: 1403564386, score: 807822 [04:51:59] [worker #0] Generated a PARSIMONY starting tree, seed: 1462093962, score: 807551 [04:54:19] [worker #0] Generated a PARSIMONY starting tree, seed: 1228650543, score: 807959 [04:56:39] [worker #0] Generated a PARSIMONY starting tree, seed: 1091270521, score: 807748 [04:59:00] [worker #0] Generated a PARSIMONY starting tree, seed: 890405116, score: 807806 [05:01:20] [worker #0] Generated a PARSIMONY starting tree, seed: 1068499056, score: 807743 [05:03:41] [worker #0] Generated a PARSIMONY starting tree, seed: 1526959717, score: 807624 [05:06:01] [worker #0] Generated a PARSIMONY starting tree, seed: 1224872768, score: 807240 [05:08:01] [worker #0] Generated a PARSIMONY starting tree, seed: 263684786, score: 808098 [05:09:53] [worker #0] Generated a PARSIMONY starting tree, seed: 2105208190, score: 807664 [05:12:14] [worker #0] Generated a PARSIMONY starting tree, seed: 673465517, score: 807444 [05:14:34] [worker #0] Generated a PARSIMONY starting tree, seed: 839630143, score: 808032 [05:16:54] [worker #0] Generated a PARSIMONY starting tree, seed: 515793710, score: 807547 [05:19:12] [worker #0] Generated a PARSIMONY starting tree, seed: 757108445, score: 807363 [05:21:32] [worker #0] Generated a PARSIMONY starting tree, seed: 1998266649, score: 807560 [05:23:53] [worker #0] Generated a PARSIMONY starting tree, seed: 1223447970, score: 807326 [05:26:13] [worker #0] Generated a PARSIMONY starting tree, seed: 732602762, score: 807821 [05:28:33] [worker #0] Generated a PARSIMONY starting tree, seed: 1830134557, score: 808146 [05:30:53] [worker #0] Generated a PARSIMONY starting tree, seed: 476633237, score: 807962 [05:33:14] [worker #0] Generated a PARSIMONY starting tree, seed: 683112204, score: 807846 [05:35:34] [worker #0] Generated a PARSIMONY starting tree, seed: 1323821185, score: 807996 [05:37:54] [worker #0] Generated a PARSIMONY starting tree, seed: 321051233, score: 807827 [05:40:15] [worker #0] Generated a PARSIMONY starting tree, seed: 1914867649, score: 807635 [05:42:35] [worker #0] Generated a PARSIMONY starting tree, seed: 2012411384, score: 808324 [05:44:56] [worker #0] Generated a PARSIMONY starting tree, seed: 1986337799, score: 807976 [05:47:16] [worker #0] Generated a PARSIMONY starting tree, seed: 1395615762, score: 808295 [05:49:36] [worker #0] Generated a PARSIMONY starting tree, seed: 1407077703, score: 808127 [05:51:57] [worker #0] Generated a PARSIMONY starting tree, seed: 1267408460, score: 807836 [05:54:17] [worker #0] Generated a PARSIMONY starting tree, seed: 555273437, score: 807850 [05:56:37] [worker #0] Generated a PARSIMONY starting tree, seed: 1484063651, score: 807778 [05:58:19] [worker #0] Generated a PARSIMONY starting tree, seed: 769601417, score: 807687 [06:00:20] [worker #0] Generated a PARSIMONY starting tree, seed: 1958837823, score: 807450 [06:02:40] [worker #0] Generated a PARSIMONY starting tree, seed: 798673965, score: 808091 [06:05:00] [worker #0] Generated a PARSIMONY starting tree, seed: 1998251960, score: 807691 [06:07:20] [worker #0] Generated a PARSIMONY starting tree, seed: 902624696, score: 808004 [06:09:41] [worker #0] Generated a PARSIMONY starting tree, seed: 1689079081, score: 807858 [06:12:01] [worker #0] Generated a PARSIMONY starting tree, seed: 919267369, score: 808206 [06:14:20] [worker #0] Generated a PARSIMONY starting tree, seed: 282100765, score: 807344 [06:16:40] [worker #0] Generated a PARSIMONY starting tree, seed: 766468201, score: 807931 [06:19:01] [worker #0] Generated a PARSIMONY starting tree, seed: 1182952155, score: 808040 [06:21:21] [worker #0] Generated a PARSIMONY starting tree, seed: 239825308, score: 807886 [06:23:41] [worker #0] Generated a PARSIMONY starting tree, seed: 1439933718, score: 807828 [06:26:01] [worker #0] Generated a PARSIMONY starting tree, seed: 2022582298, score: 807188 [06:28:21] [worker #0] Generated a PARSIMONY starting tree, seed: 755619018, score: 807728 [06:30:41] [worker #0] Generated a PARSIMONY starting tree, seed: 49558515, score: 807497 [06:32:59] [worker #0] Generated a PARSIMONY starting tree, seed: 1873365299, score: 808152 [06:35:19] [worker #0] Generated a PARSIMONY starting tree, seed: 1979066988, score: 807559 [06:37:39] [worker #0] Generated a PARSIMONY starting tree, seed: 782161277, score: 808329 [06:40:00] [worker #0] Generated a PARSIMONY starting tree, seed: 1556016209, score: 807802 [06:42:20] [worker #0] Generated a PARSIMONY starting tree, seed: 308216577, score: 807435 [06:44:40] [worker #0] Generated a PARSIMONY starting tree, seed: 1465273482, score: 808023 [06:47:00] [worker #0] Generated a PARSIMONY starting tree, seed: 732353746, score: 808113 [06:49:20] [worker #0] Generated a PARSIMONY starting tree, seed: 629267811, score: 807630 [06:51:40] [worker #0] Generated a PARSIMONY starting tree, seed: 1232657483, score: 808400 [06:54:00] [worker #0] Generated a PARSIMONY starting tree, seed: 597281482, score: 807623 [06:56:20] [worker #0] Generated a PARSIMONY starting tree, seed: 468121962, score: 807268 [06:58:40] [worker #0] Generated a PARSIMONY starting tree, seed: 480789597, score: 807790 [07:01:01] [worker #0] Generated a PARSIMONY starting tree, seed: 2004359185, score: 807431 [07:03:21] [worker #0] Generated a PARSIMONY starting tree, seed: 1735530423, score: 808056 [07:05:41] [worker #0] Generated a PARSIMONY starting tree, seed: 1036063034, score: 808001 [07:08:01] [worker #0] Generated a PARSIMONY starting tree, seed: 1340939189, score: 807851 [07:10:21] [worker #0] Generated a PARSIMONY starting tree, seed: 357648192, score: 807967 [07:12:41] [worker #0] Generated a PARSIMONY starting tree, seed: 847417210, score: 807739 [07:15:01] [worker #0] Generated a PARSIMONY starting tree, seed: 2139613154, score: 808112 [07:17:21] [worker #0] Generated a PARSIMONY starting tree, seed: 208416505, score: 807719 [07:19:42] [worker #0] Generated a PARSIMONY starting tree, seed: 1750041906, score: 807992 [07:22:02] [worker #0] Generated a PARSIMONY starting tree, seed: 1681208588, score: 807762 [07:24:22] [worker #0] Generated a PARSIMONY starting tree, seed: 1127683874, score: 808188 [07:26:42] [worker #0] Generated a PARSIMONY starting tree, seed: 2032142672, score: 807524 [07:29:03] [worker #0] Generated a PARSIMONY starting tree, seed: 300193141, score: 808282 [07:31:23] [worker #0] Generated a PARSIMONY starting tree, seed: 163152381, score: 807676 [07:33:43] [worker #0] Generated a PARSIMONY starting tree, seed: 124484332, score: 807773 [07:36:03] [worker #0] Generated a PARSIMONY starting tree, seed: 1740126860, score: 807536 [07:38:24] [worker #0] Generated a PARSIMONY starting tree, seed: 38251031, score: 807892 [07:40:44] [worker #0] Generated a PARSIMONY starting tree, seed: 880103350, score: 807656 [07:43:02] [worker #0] Generated a PARSIMONY starting tree, seed: 1789685375, score: 807593 [07:45:23] [worker #0] Generated a PARSIMONY starting tree, seed: 1911616330, score: 807631 [07:47:43] [worker #0] Generated a PARSIMONY starting tree, seed: 711686690, score: 808040 [07:50:03] [worker #0] Generated a PARSIMONY starting tree, seed: 424363005, score: 807853 [07:52:24] [worker #0] Generated a PARSIMONY starting tree, seed: 1320148891, score: 807448 [07:54:44] [worker #0] Generated a PARSIMONY starting tree, seed: 1019903268, score: 807837 [07:57:05] [worker #0] Generated a PARSIMONY starting tree, seed: 1889636487, score: 808187 [07:59:25] [worker #0] Generated a PARSIMONY starting tree, seed: 2052502637, score: 807641 [08:01:45] [worker #0] Generated a PARSIMONY starting tree, seed: 1649171079, score: 808112 [08:04:06] [worker #0] Generated a PARSIMONY starting tree, seed: 974810322, score: 807532 [08:06:26] [worker #0] Generated a PARSIMONY starting tree, seed: 502300472, score: 808258 [08:08:46] [worker #0] Generated a PARSIMONY starting tree, seed: 2117293041, score: 807675 [08:11:07] [worker #0] Generated a PARSIMONY starting tree, seed: 1455599920, score: 807934 [08:13:27] [worker #0] Generated a PARSIMONY starting tree, seed: 359176009, score: 808611 [08:15:47] [worker #0] Generated a PARSIMONY starting tree, seed: 1705339816, score: 807613 [08:18:06] [worker #0] Generated a PARSIMONY starting tree, seed: 344179306, score: 808307 [08:20:27] [worker #0] Generated a PARSIMONY starting tree, seed: 1700115198, score: 807430 [08:22:47] [worker #0] Generated a PARSIMONY starting tree, seed: 2062988009, score: 808002 [08:25:07] [worker #0] Generated a PARSIMONY starting tree, seed: 1191596516, score: 807974 [08:27:28] [worker #0] Generated a PARSIMONY starting tree, seed: 1692244705, score: 807631 [08:29:48] [worker #0] Generated a PARSIMONY starting tree, seed: 123920866, score: 807821 [08:32:08] [worker #0] Generated a PARSIMONY starting tree, seed: 794154775, score: 807869 [08:34:29] [worker #0] Generated a PARSIMONY starting tree, seed: 1225969645, score: 807258 [08:36:49] [worker #0] Generated a PARSIMONY starting tree, seed: 1251604740, score: 807792 [08:39:10] [worker #0] Generated a PARSIMONY starting tree, seed: 678813799, score: 808174 [08:41:30] [worker #0] Generated a PARSIMONY starting tree, seed: 1526162786, score: 807907 [08:43:50] [worker #0] Generated a PARSIMONY starting tree, seed: 1414757121, score: 807443 [08:46:10] [worker #0] Generated a PARSIMONY starting tree, seed: 803298131, score: 808434 [08:48:30] [worker #0] Generated a PARSIMONY starting tree, seed: 1118805998, score: 807696 [08:50:51] [worker #0] Generated a PARSIMONY starting tree, seed: 1453008152, score: 807476 [08:53:11] [worker #0] Generated a PARSIMONY starting tree, seed: 1683401481, score: 807703 [08:55:31] [worker #0] Generated a PARSIMONY starting tree, seed: 761007726, score: 807591 [08:57:51] [worker #0] Generated a PARSIMONY starting tree, seed: 1217140834, score: 807688 [09:00:11] [worker #0] Generated a PARSIMONY starting tree, seed: 247604523, score: 807206 [09:02:31] [worker #0] Generated a PARSIMONY starting tree, seed: 1185370731, score: 807553 [09:04:52] [worker #0] Generated a PARSIMONY starting tree, seed: 389806078, score: 807782 [09:07:12] [worker #0] Generated a PARSIMONY starting tree, seed: 1267507791, score: 807598 [09:09:32] [worker #0] Generated a PARSIMONY starting tree, seed: 927523570, score: 808019 [09:11:52] [worker #0] Generated a PARSIMONY starting tree, seed: 294825067, score: 807684 [09:14:12] [worker #0] Generated a PARSIMONY starting tree, seed: 769195222, score: 807830 [09:16:32] [worker #0] Generated a PARSIMONY starting tree, seed: 1902333892, score: 807681 [09:18:53] [worker #0] Generated a PARSIMONY starting tree, seed: 797125539, score: 808376 [09:21:13] [worker #0] Generated a PARSIMONY starting tree, seed: 739004616, score: 807790 [09:23:32] [worker #0] Generated a PARSIMONY starting tree, seed: 1210450164, score: 807583 [09:25:52] [worker #0] Generated a PARSIMONY starting tree, seed: 1156301549, score: 807462 [09:28:12] [worker #0] Generated a PARSIMONY starting tree, seed: 296860784, score: 807624 [09:30:32] [worker #0] Generated a PARSIMONY starting tree, seed: 1554629471, score: 807738 [09:32:52] [worker #0] Generated a PARSIMONY starting tree, seed: 708933099, score: 807459 [09:35:12] [worker #0] Generated a PARSIMONY starting tree, seed: 212365145, score: 807447 [09:37:32] [worker #0] Generated a PARSIMONY starting tree, seed: 598742339, score: 808667 [09:39:52] [worker #0] Generated a PARSIMONY starting tree, seed: 253694156, score: 807336 [09:42:13] [worker #0] Generated a PARSIMONY starting tree, seed: 336286011, score: 807372 [09:44:32] [worker #0] Generated a PARSIMONY starting tree, seed: 1392897114, score: 808025 [09:46:52] [worker #0] Generated a PARSIMONY starting tree, seed: 1479663801, score: 807960 [09:49:12] [worker #0] Generated a PARSIMONY starting tree, seed: 1587890751, score: 807202 [09:51:32] [worker #0] Generated a PARSIMONY starting tree, seed: 2071710913, score: 807867 [09:53:52] [worker #0] Generated a PARSIMONY starting tree, seed: 858342940, score: 807622 [09:56:12] [worker #0] Generated a PARSIMONY starting tree, seed: 855164224, score: 807414 [09:58:32] [worker #0] Generated a PARSIMONY starting tree, seed: 727525396, score: 807793 [10:00:52] [worker #0] Generated a PARSIMONY starting tree, seed: 1977148938, score: 808004 [10:03:12] [worker #0] Generated a PARSIMONY starting tree, seed: 160688728, score: 807858 [10:05:33] [worker #0] Generated a PARSIMONY starting tree, seed: 263443229, score: 808058 [10:07:53] [worker #0] Generated a PARSIMONY starting tree, seed: 590673016, score: 807309 [10:10:13] [worker #0] Generated a PARSIMONY starting tree, seed: 1377829563, score: 807672 [10:12:33] [worker #0] Generated a PARSIMONY starting tree, seed: 511047753, score: 807959 [10:14:54] [worker #0] Generated a PARSIMONY starting tree, seed: 1776043747, score: 807940 [10:17:14] [worker #0] Generated a PARSIMONY starting tree, seed: 1767635641, score: 807923 [10:19:34] [worker #0] Generated a PARSIMONY starting tree, seed: 1778555544, score: 808213 [10:21:55] [worker #0] Generated a PARSIMONY starting tree, seed: 556083669, score: 807739 [10:24:15] [worker #0] Generated a PARSIMONY starting tree, seed: 2062460708, score: 807387 [10:26:35] [worker #0] Generated a PARSIMONY starting tree, seed: 400267119, score: 807092 [10:28:55] [worker #0] Generated a PARSIMONY starting tree, seed: 310933914, score: 807674 [10:31:15] [worker #0] Generated a PARSIMONY starting tree, seed: 712102600, score: 808065 [10:33:35] [worker #0] Generated a PARSIMONY starting tree, seed: 1139271735, score: 807251 [10:35:55] [worker #0] Generated a PARSIMONY starting tree, seed: 1521384078, score: 807161 [10:38:15] [worker #0] Generated a PARSIMONY starting tree, seed: 1868404149, score: 807440 [10:40:35] [worker #0] Generated a PARSIMONY starting tree, seed: 1436132519, score: 807657 [10:42:56] [worker #0] Generated a PARSIMONY starting tree, seed: 928529901, score: 807593 [10:45:16] [worker #0] Generated a PARSIMONY starting tree, seed: 429853600, score: 807759 [10:47:36] [worker #0] Generated a PARSIMONY starting tree, seed: 1648497665, score: 807416 [10:49:56] [worker #0] Generated a PARSIMONY starting tree, seed: 1527272241, score: 807689 [10:52:16] [worker #0] Generated a PARSIMONY starting tree, seed: 683547757, score: 807520 [10:54:37] [worker #0] Generated a PARSIMONY starting tree, seed: 1984783676, score: 807942 [10:56:57] [worker #0] Generated a PARSIMONY starting tree, seed: 772685707, score: 807508 [10:59:17] [worker #0] Generated a PARSIMONY starting tree, seed: 15727910, score: 807301 [11:01:37] [worker #0] Generated a PARSIMONY starting tree, seed: 1425190780, score: 807639 [11:03:58] [worker #0] Generated a PARSIMONY starting tree, seed: 696912973, score: 807793 [11:06:18] [worker #0] Generated a PARSIMONY starting tree, seed: 874070850, score: 807699 [11:08:38] [worker #0] Generated a PARSIMONY starting tree, seed: 132871356, score: 807490 [11:10:58] [worker #0] Generated a PARSIMONY starting tree, seed: 1424438369, score: 808130 [11:13:19] [worker #0] Generated a PARSIMONY starting tree, seed: 703736141, score: 807616 [11:15:39] [worker #0] Generated a PARSIMONY starting tree, seed: 293560085, score: 807557 [11:17:59] [worker #0] Generated a PARSIMONY starting tree, seed: 1687881599, score: 808120 [11:20:20] [worker #0] Generated a PARSIMONY starting tree, seed: 1294409157, score: 807756 [11:22:40] [worker #0] Generated a PARSIMONY starting tree, seed: 1671389648, score: 807664 [11:24:59] [worker #0] Generated a PARSIMONY starting tree, seed: 51445704, score: 808049 [11:27:19] [worker #0] Generated a PARSIMONY starting tree, seed: 922969257, score: 808168 [11:29:39] [worker #0] Generated a PARSIMONY starting tree, seed: 1291541641, score: 807449 [11:31:59] [worker #0] Generated a PARSIMONY starting tree, seed: 1830001248, score: 807475 [11:34:19] [worker #0] Generated a PARSIMONY starting tree, seed: 1479052926, score: 807911 [11:36:39] [worker #0] Generated a PARSIMONY starting tree, seed: 1206518701, score: 807982 [11:38:59] [worker #0] Generated a PARSIMONY starting tree, seed: 82784719, score: 807916 [11:41:19] [worker #0] Generated a PARSIMONY starting tree, seed: 1789986840, score: 808178 [11:43:39] [worker #0] Generated a PARSIMONY starting tree, seed: 1918621301, score: 807669 [11:45:59] [worker #0] Generated a PARSIMONY starting tree, seed: 1222056454, score: 807826 [11:48:19] [worker #0] Generated a PARSIMONY starting tree, seed: 1163887271, score: 807922 [11:50:40] [worker #0] Generated a PARSIMONY starting tree, seed: 1639541802, score: 807980 [11:53:00] [worker #0] Generated a PARSIMONY starting tree, seed: 510705326, score: 807736 [11:55:20] [worker #0] Generated a PARSIMONY starting tree, seed: 2092417172, score: 807650 [11:57:40] [worker #0] Generated a PARSIMONY starting tree, seed: 2069395403, score: 807251 [12:00:00] [worker #0] Generated a PARSIMONY starting tree, seed: 11719343, score: 807903 [12:02:20] [worker #0] Generated a PARSIMONY starting tree, seed: 1472205765, score: 808040 [12:04:40] [worker #0] Generated a PARSIMONY starting tree, seed: 605459512, score: 807408 [12:07:00] [worker #0] Generated a PARSIMONY starting tree, seed: 1996503019, score: 807209 [12:09:21] [worker #0] Generated a PARSIMONY starting tree, seed: 97407825, score: 807657 [12:11:41] [worker #0] Generated a PARSIMONY starting tree, seed: 621187422, score: 807240 [12:14:01] [worker #0] Generated a PARSIMONY starting tree, seed: 1274210151, score: 808069 [12:16:21] [worker #0] Generated a PARSIMONY starting tree, seed: 794320798, score: 807390 [12:18:41] [worker #0] Generated a PARSIMONY starting tree, seed: 1495258273, score: 808111 [12:21:01] [worker #0] Generated a PARSIMONY starting tree, seed: 1407081508, score: 807584 [12:23:21] [worker #0] Generated a PARSIMONY starting tree, seed: 71275519, score: 807427 [12:25:41] [worker #0] Generated a PARSIMONY starting tree, seed: 51510766, score: 807485 [12:28:02] [worker #0] Generated a PARSIMONY starting tree, seed: 1700641593, score: 807529 [12:30:23] [worker #0] Generated a PARSIMONY starting tree, seed: 1759157118, score: 807913 [12:32:43] [worker #0] Generated a PARSIMONY starting tree, seed: 1345919923, score: 807912 [12:35:03] [worker #0] Generated a PARSIMONY starting tree, seed: 1224547593, score: 807851 [12:37:23] [worker #0] Generated a PARSIMONY starting tree, seed: 1810602822, score: 807930 [12:39:43] [worker #0] Generated a PARSIMONY starting tree, seed: 121405532, score: 807207 [12:42:03] [worker #0] Generated a PARSIMONY starting tree, seed: 368605586, score: 807896 [12:44:23] [worker #0] Generated a PARSIMONY starting tree, seed: 1493120423, score: 808084 [12:46:43] [worker #0] Generated a PARSIMONY starting tree, seed: 1600458459, score: 807628 [12:49:03] [worker #0] Generated a PARSIMONY starting tree, seed: 1575124287, score: 807626 [12:51:22] [worker #0] Generated a PARSIMONY starting tree, seed: 1575905142, score: 807489 [12:53:42] [worker #0] Generated a PARSIMONY starting tree, seed: 1242961651, score: 807694 [12:56:02] [worker #0] Generated a PARSIMONY starting tree, seed: 1346261941, score: 807681 [12:58:22] [worker #0] Generated a PARSIMONY starting tree, seed: 650477949, score: 808079 [13:00:42] [worker #0] Generated a PARSIMONY starting tree, seed: 259365274, score: 807610 [13:03:02] [worker #0] Generated a PARSIMONY starting tree, seed: 838320095, score: 807387 [13:05:22] [worker #0] Generated a PARSIMONY starting tree, seed: 1161183275, score: 808100 [13:07:42] [worker #0] Generated a PARSIMONY starting tree, seed: 204298799, score: 808252 [13:10:02] [worker #0] Generated a PARSIMONY starting tree, seed: 760231850, score: 807393 [13:12:22] [worker #0] Generated a PARSIMONY starting tree, seed: 1172902618, score: 807249 [13:14:42] [worker #0] Generated a PARSIMONY starting tree, seed: 1676504564, score: 807439 [13:17:02] [worker #0] Generated a PARSIMONY starting tree, seed: 1365691362, score: 808206 [13:19:22] [worker #0] Generated a PARSIMONY starting tree, seed: 1021921989, score: 807741 [13:21:42] [worker #0] Generated a PARSIMONY starting tree, seed: 1773912389, score: 807285 [13:24:00] [worker #0] Generated a PARSIMONY starting tree, seed: 1986878785, score: 807735 [13:26:20] [worker #0] Generated a PARSIMONY starting tree, seed: 148648493, score: 808276 [13:28:40] [worker #0] Generated a PARSIMONY starting tree, seed: 420749539, score: 807937 [13:31:00] [worker #0] Generated a PARSIMONY starting tree, seed: 1334653410, score: 807433 [13:33:20] [worker #0] Generated a PARSIMONY starting tree, seed: 1555730001, score: 808115 [13:35:40] [worker #0] Generated a PARSIMONY starting tree, seed: 492025059, score: 808147 [13:38:00] [worker #0] Generated a PARSIMONY starting tree, seed: 1386164176, score: 807388 [13:40:20] [worker #0] Generated a PARSIMONY starting tree, seed: 1108887946, score: 808212 [13:42:40] [worker #0] Generated a PARSIMONY starting tree, seed: 103698529, score: 807916 [13:45:00] [worker #0] Generated a PARSIMONY starting tree, seed: 584600451, score: 807757 [13:47:20] [worker #0] Generated a PARSIMONY starting tree, seed: 185951891, score: 808210 [13:49:40] [worker #0] Generated a PARSIMONY starting tree, seed: 1914301352, score: 807952 [13:52:00] [worker #0] Generated a PARSIMONY starting tree, seed: 706005984, score: 808218 [13:54:20] [worker #0] Generated a PARSIMONY starting tree, seed: 554557477, score: 807600 [13:56:40] [worker #0] Generated a PARSIMONY starting tree, seed: 1259938127, score: 808030 [13:58:58] [worker #0] Generated a PARSIMONY starting tree, seed: 158980795, score: 808771 [14:00:42] [worker #0] Generated a PARSIMONY starting tree, seed: 2129681764, score: 807652 [14:03:00] [worker #0] Generated a PARSIMONY starting tree, seed: 688359621, score: 807659 [14:05:18] [worker #0] Generated a PARSIMONY starting tree, seed: 1401942446, score: 807989 [14:07:36] [worker #0] Generated a PARSIMONY starting tree, seed: 1328460057, score: 807362 [14:09:54] [worker #0] Generated a PARSIMONY starting tree, seed: 1338837570, score: 807777 [14:12:14] [worker #0] Generated a PARSIMONY starting tree, seed: 1661307721, score: 807650 [14:14:34] [worker #0] Generated a PARSIMONY starting tree, seed: 19296505, score: 808275 [14:16:54] [worker #0] Generated a PARSIMONY starting tree, seed: 352537197, score: 807439 [14:19:14] [worker #0] Generated a PARSIMONY starting tree, seed: 1865606520, score: 807955 [14:21:34] [worker #0] Generated a PARSIMONY starting tree, seed: 779528355, score: 807522 [14:23:54] [worker #0] Generated a PARSIMONY starting tree, seed: 1525439815, score: 807861 [14:26:14] [worker #0] Generated a PARSIMONY starting tree, seed: 1394627436, score: 807899 [14:28:35] [worker #0] Generated a PARSIMONY starting tree, seed: 2145219718, score: 808131 [14:30:55] [worker #0] Generated a PARSIMONY starting tree, seed: 399878157, score: 808072 [14:32:52] [worker #0] Generated a PARSIMONY starting tree, seed: 1021056178, score: 807584 [14:34:28] [worker #0] Generated a PARSIMONY starting tree, seed: 1984614855, score: 807533 [14:36:08] [worker #0] Generated a PARSIMONY starting tree, seed: 548526650, score: 807486 [14:37:59] [worker #0] Generated a PARSIMONY starting tree, seed: 1441805717, score: 807226 [14:39:57] [worker #0] Generated a PARSIMONY starting tree, seed: 1171784617, score: 807395 [14:41:41] [worker #0] Generated a PARSIMONY starting tree, seed: 2104256651, score: 807529 [14:44:01] [worker #0] Generated a PARSIMONY starting tree, seed: 1933830776, score: 807525 [14:46:22] [worker #0] Generated a PARSIMONY starting tree, seed: 410465145, score: 807770 [14:48:43] [worker #0] Generated a PARSIMONY starting tree, seed: 1065660949, score: 807671 [14:51:03] [worker #0] Generated a PARSIMONY starting tree, seed: 2037529306, score: 808007 [14:53:24] [worker #0] Generated a PARSIMONY starting tree, seed: 995065596, score: 807947 [14:55:45] [worker #0] Generated a PARSIMONY starting tree, seed: 1251612840, score: 808458 [14:58:05] [worker #0] Generated a PARSIMONY starting tree, seed: 1804347010, score: 807354 [15:00:26] [worker #0] Generated a PARSIMONY starting tree, seed: 1701071580, score: 807244 [15:02:47] [worker #0] Generated a PARSIMONY starting tree, seed: 1806170317, score: 807469 [15:05:07] [worker #0] Generated a PARSIMONY starting tree, seed: 916801489, score: 807670 [15:07:28] [worker #0] Generated a PARSIMONY starting tree, seed: 1860052375, score: 807584 [15:09:48] [worker #0] Generated a PARSIMONY starting tree, seed: 1788368433, score: 807429 [15:12:09] [worker #0] Generated a PARSIMONY starting tree, seed: 1605161110, score: 807637 [15:14:29] [worker #0] Generated a PARSIMONY starting tree, seed: 1114511174, score: 807529 [15:16:50] [worker #0] Generated a PARSIMONY starting tree, seed: 969344843, score: 807943 [15:19:11] [worker #0] Generated a PARSIMONY starting tree, seed: 796515033, score: 808007 [15:21:31] [worker #0] Generated a PARSIMONY starting tree, seed: 628335247, score: 807480 [15:23:50] [worker #0] Generated a PARSIMONY starting tree, seed: 988641348, score: 807777 [15:26:11] [worker #0] Generated a PARSIMONY starting tree, seed: 1149052230, score: 807448 [15:28:31] [worker #0] Generated a PARSIMONY starting tree, seed: 346458119, score: 807327 [15:30:52] [worker #0] Generated a PARSIMONY starting tree, seed: 1768169703, score: 807333 [15:33:13] [worker #0] Generated a PARSIMONY starting tree, seed: 527008398, score: 807485 [15:35:33] [worker #0] Generated a PARSIMONY starting tree, seed: 1741085555, score: 808037 [15:37:54] [worker #0] Generated a PARSIMONY starting tree, seed: 1765905773, score: 807361 [15:40:14] [worker #0] Generated a PARSIMONY starting tree, seed: 926886555, score: 807850 [15:42:35] [worker #0] Generated a PARSIMONY starting tree, seed: 614658085, score: 807829 [15:44:55] [worker #0] Generated a PARSIMONY starting tree, seed: 1603036980, score: 807531 [15:47:16] [worker #0] Generated a PARSIMONY starting tree, seed: 1475413205, score: 808279 [15:49:37] [worker #0] Generated a PARSIMONY starting tree, seed: 2056463803, score: 807904 [15:51:57] [worker #0] Generated a PARSIMONY starting tree, seed: 627337949, score: 807543 [15:54:18] [worker #0] Generated a PARSIMONY starting tree, seed: 1432186208, score: 808021 [15:56:38] [worker #0] Generated a PARSIMONY starting tree, seed: 1842810931, score: 808063 [15:58:59] [worker #0] Generated a PARSIMONY starting tree, seed: 1037803094, score: 807275 [16:01:20] [worker #0] Generated a PARSIMONY starting tree, seed: 350363509, score: 807626 [16:03:40] [worker #0] Generated a PARSIMONY starting tree, seed: 1732856589, score: 807670 [16:06:01] [worker #0] Generated a PARSIMONY starting tree, seed: 2032868691, score: 807579 [16:08:20] [worker #0] Generated a PARSIMONY starting tree, seed: 1601976349, score: 808015 [16:10:41] [worker #0] Generated a PARSIMONY starting tree, seed: 1389719951, score: 807753 [16:13:02] [worker #0] Generated a PARSIMONY starting tree, seed: 1586456623, score: 807521 [16:15:22] [worker #0] Generated a PARSIMONY starting tree, seed: 1260663018, score: 807577 [16:17:43] [worker #0] Generated a PARSIMONY starting tree, seed: 159037792, score: 807510 [16:20:03] [worker #0] Generated a PARSIMONY starting tree, seed: 1299025351, score: 807667 [16:22:24] [worker #0] Generated a PARSIMONY starting tree, seed: 901547803, score: 807757 [16:24:45] [worker #0] Generated a PARSIMONY starting tree, seed: 1764198903, score: 807940 [16:27:05] [worker #0] Generated a PARSIMONY starting tree, seed: 266052877, score: 807483 [16:29:26] [worker #0] Generated a PARSIMONY starting tree, seed: 1870892646, score: 807303 [16:31:47] [worker #0] Generated a PARSIMONY starting tree, seed: 413230288, score: 807832 [16:34:07] [worker #0] Generated a PARSIMONY starting tree, seed: 894388124, score: 807556 [16:36:28] [worker #0] Generated a PARSIMONY starting tree, seed: 712050346, score: 808458 [16:38:48] [worker #0] Generated a PARSIMONY starting tree, seed: 1562282518, score: 807816 [16:41:09] [worker #0] Generated a PARSIMONY starting tree, seed: 1240846243, score: 807217 [16:43:30] [worker #0] Generated a PARSIMONY starting tree, seed: 332736402, score: 807835 [16:45:50] [worker #0] Generated a PARSIMONY starting tree, seed: 2089290916, score: 807615 [16:48:11] [worker #0] Generated a PARSIMONY starting tree, seed: 834448150, score: 807308 [16:50:32] [worker #0] Generated a PARSIMONY starting tree, seed: 2098642175, score: 807514 [16:52:52] [worker #0] Generated a PARSIMONY starting tree, seed: 868693823, score: 807512 [16:55:13] [worker #0] Generated a PARSIMONY starting tree, seed: 1449106236, score: 808015 [16:57:33] [worker #0] Generated a PARSIMONY starting tree, seed: 1554195508, score: 808005 [16:59:54] [worker #0] Generated a PARSIMONY starting tree, seed: 196623380, score: 807680 [17:02:15] [worker #0] Generated a PARSIMONY starting tree, seed: 1358086391, score: 807949 [17:04:35] [worker #0] Generated a PARSIMONY starting tree, seed: 34049809, score: 808173 [17:06:56] [worker #0] Generated a PARSIMONY starting tree, seed: 1628809588, score: 807522 [17:09:17] [worker #0] Generated a PARSIMONY starting tree, seed: 1053413674, score: 807654 [17:11:37] [worker #0] Generated a PARSIMONY starting tree, seed: 1071852904, score: 808287 [17:13:58] [worker #0] Generated a PARSIMONY starting tree, seed: 1979173097, score: 807751 [17:16:19] [worker #0] Generated a PARSIMONY starting tree, seed: 638786616, score: 807676 [17:18:34] [worker #0] Generated a PARSIMONY starting tree, seed: 957237947, score: 807623 [17:20:55] [worker #0] Generated a PARSIMONY starting tree, seed: 1433665798, score: 807960 [17:23:16] [worker #0] Generated a PARSIMONY starting tree, seed: 2028506567, score: 807861 [17:25:36] [worker #0] Generated a PARSIMONY starting tree, seed: 396210922, score: 807720 [17:27:57] [worker #0] Generated a PARSIMONY starting tree, seed: 546845168, score: 807784 [17:29:37] [worker #0] Generated a PARSIMONY starting tree, seed: 40060712, score: 807664 [17:31:12] [worker #0] Generated a PARSIMONY starting tree, seed: 1695236273, score: 808236 [17:33:17] [worker #0] Generated a PARSIMONY starting tree, seed: 1448392972, score: 807714 [17:35:37] [worker #0] Generated a PARSIMONY starting tree, seed: 1804259615, score: 807854 [17:37:57] [worker #0] Generated a PARSIMONY starting tree, seed: 1961289150, score: 808272 [17:40:18] [worker #0] Generated a PARSIMONY starting tree, seed: 1171801970, score: 807866 [17:42:38] [worker #0] Generated a PARSIMONY starting tree, seed: 70006255, score: 808025 [17:44:58] [worker #0] Generated a PARSIMONY starting tree, seed: 708193626, score: 807437 [17:47:17] [worker #0] Generated a PARSIMONY starting tree, seed: 1883852317, score: 807513 [17:49:37] [worker #0] Generated a PARSIMONY starting tree, seed: 1632288773, score: 808029 [17:51:57] [worker #0] Generated a PARSIMONY starting tree, seed: 1949039869, score: 807766 [17:54:17] [worker #0] Generated a PARSIMONY starting tree, seed: 69105071, score: 807918 [17:56:37] [worker #0] Generated a PARSIMONY starting tree, seed: 1574096042, score: 807850 [17:58:57] [worker #0] Generated a PARSIMONY starting tree, seed: 636004372, score: 807506 [18:01:17] [worker #0] Generated a PARSIMONY starting tree, seed: 20263598, score: 807481 [18:03:37] [worker #0] Generated a PARSIMONY starting tree, seed: 295306217, score: 807494 [18:05:57] [worker #0] Generated a PARSIMONY starting tree, seed: 2085110608, score: 808696 [18:08:17] [worker #0] Generated a PARSIMONY starting tree, seed: 1574459106, score: 807901 [18:10:38] [worker #0] Generated a PARSIMONY starting tree, seed: 491929598, score: 807703 [18:12:58] [worker #0] Generated a PARSIMONY starting tree, seed: 1295713351, score: 807732 [18:15:18] [worker #0] Generated a PARSIMONY starting tree, seed: 1608508916, score: 807495 [18:17:38] [worker #0] Generated a PARSIMONY starting tree, seed: 2120739186, score: 807680 [18:19:58] [worker #0] Generated a PARSIMONY starting tree, seed: 201643377, score: 808024 [18:22:18] [worker #0] Generated a PARSIMONY starting tree, seed: 532878172, score: 807900 [18:24:38] [worker #0] Generated a PARSIMONY starting tree, seed: 1952428636, score: 808023 [18:26:58] [worker #0] Generated a PARSIMONY starting tree, seed: 840429993, score: 807441 [18:29:18] [worker #0] Generated a PARSIMONY starting tree, seed: 1490116119, score: 808155 [18:31:38] [worker #0] Generated a PARSIMONY starting tree, seed: 1238610786, score: 807745 [18:33:59] [worker #0] Generated a PARSIMONY starting tree, seed: 721452913, score: 807778 [18:36:19] [worker #0] Generated a PARSIMONY starting tree, seed: 1886327041, score: 807706 [18:38:39] [worker #0] Generated a PARSIMONY starting tree, seed: 1785455955, score: 808680 [18:40:59] [worker #0] Generated a PARSIMONY starting tree, seed: 761513625, score: 808047 [18:43:19] [worker #0] Generated a PARSIMONY starting tree, seed: 1434079667, score: 807932 [18:45:39] [worker #0] Generated a PARSIMONY starting tree, seed: 1086365279, score: 807435 [18:48:00] [worker #0] Generated a PARSIMONY starting tree, seed: 418289592, score: 807524 [18:50:20] [worker #0] Generated a PARSIMONY starting tree, seed: 1247885169, score: 808443 [18:52:40] [worker #0] Generated a PARSIMONY starting tree, seed: 110683601, score: 807730 [18:55:00] [worker #0] Generated a PARSIMONY starting tree, seed: 488295847, score: 808267 [18:57:20] [worker #0] Generated a PARSIMONY starting tree, seed: 1956078796, score: 807622 [18:59:40] [worker #0] Generated a PARSIMONY starting tree, seed: 1994535918, score: 807756 [19:02:00] [worker #0] Generated a PARSIMONY starting tree, seed: 2120584620, score: 808180 [19:04:20] [worker #0] Generated a PARSIMONY starting tree, seed: 1757635017, score: 807500 [19:06:41] [worker #0] Generated a PARSIMONY starting tree, seed: 2063640989, score: 807765 [19:09:01] [worker #0] Generated a PARSIMONY starting tree, seed: 1547197014, score: 807827 [19:11:21] [worker #0] Generated a PARSIMONY starting tree, seed: 246155741, score: 807583 [19:13:41] [worker #0] Generated a PARSIMONY starting tree, seed: 2083904588, score: 807947 [19:16:01] [worker #0] Generated a PARSIMONY starting tree, seed: 1842503232, score: 808111 [19:18:19] [worker #0] Generated a PARSIMONY starting tree, seed: 183782701, score: 807154 [19:20:39] [worker #0] Generated a PARSIMONY starting tree, seed: 1510880046, score: 807785 [19:22:59] [worker #0] Generated a PARSIMONY starting tree, seed: 186949182, score: 807318 [19:25:19] [worker #0] Generated a PARSIMONY starting tree, seed: 1479496052, score: 807449 [19:27:39] [worker #0] Generated a PARSIMONY starting tree, seed: 971905314, score: 808324 [19:29:59] [worker #0] Generated a PARSIMONY starting tree, seed: 160204720, score: 807367 [19:32:19] [worker #0] Generated a PARSIMONY starting tree, seed: 1681139430, score: 807707 [19:34:40] [worker #0] Generated a PARSIMONY starting tree, seed: 1504783486, score: 807835 [19:37:00] [worker #0] Generated a PARSIMONY starting tree, seed: 2112633356, score: 807643 [19:39:20] [worker #0] Generated a PARSIMONY starting tree, seed: 374085775, score: 808128 [19:41:40] [worker #0] Generated a PARSIMONY starting tree, seed: 847415957, score: 808239 [19:44:00] [worker #0] Generated a PARSIMONY starting tree, seed: 1203760495, score: 808087 [19:46:20] [worker #0] Generated a PARSIMONY starting tree, seed: 1095538688, score: 808283 [19:48:41] [worker #0] Generated a PARSIMONY starting tree, seed: 586259351, score: 807690 [19:51:01] [worker #0] Generated a PARSIMONY starting tree, seed: 841732802, score: 808205 [19:53:21] [worker #0] Generated a PARSIMONY starting tree, seed: 1857052313, score: 807830 [19:55:41] [worker #0] Generated a PARSIMONY starting tree, seed: 2020339018, score: 807420 [19:58:01] [worker #0] Generated a PARSIMONY starting tree, seed: 1928098081, score: 807545 [20:00:21] [worker #0] Generated a PARSIMONY starting tree, seed: 127858257, score: 808024 [20:02:42] [worker #0] Generated a PARSIMONY starting tree, seed: 1120740539, score: 808028 [20:05:02] [worker #0] Generated a PARSIMONY starting tree, seed: 2038781682, score: 807336 [20:07:22] [worker #0] Generated a PARSIMONY starting tree, seed: 616154104, score: 807686 [20:09:42] [worker #0] Generated a PARSIMONY starting tree, seed: 929335687, score: 807300 [20:12:02] [worker #0] Generated a PARSIMONY starting tree, seed: 1885833953, score: 807445 [20:14:22] [worker #0] Generated a PARSIMONY starting tree, seed: 589255077, score: 808140 [20:16:42] [worker #0] Generated a PARSIMONY starting tree, seed: 539487057, score: 807485 [20:19:03] [worker #0] Generated a PARSIMONY starting tree, seed: 1801991294, score: 807851 [20:21:23] [worker #0] Generated a PARSIMONY starting tree, seed: 2136452091, score: 808051 [20:23:43] [worker #0] Generated a PARSIMONY starting tree, seed: 785642798, score: 807669 [20:26:03] [worker #0] Generated a PARSIMONY starting tree, seed: 1738412234, score: 807700 [20:28:23] [worker #0] Generated a PARSIMONY starting tree, seed: 1831471675, score: 808354 [20:30:43] [worker #0] Generated a PARSIMONY starting tree, seed: 969425500, score: 808082 [20:33:04] [worker #0] Generated a PARSIMONY starting tree, seed: 1101808633, score: 807565 [20:35:24] [worker #0] Generated a PARSIMONY starting tree, seed: 2018420857, score: 807680 [20:37:43] [worker #0] Generated a PARSIMONY starting tree, seed: 301437904, score: 807396 [20:40:04] [worker #0] Generated a PARSIMONY starting tree, seed: 2073713947, score: 808604 [20:42:24] [worker #0] Generated a PARSIMONY starting tree, seed: 31141930, score: 807665 [20:44:45] [worker #0] Generated a PARSIMONY starting tree, seed: 1982577334, score: 807323 [20:47:05] [worker #0] Generated a PARSIMONY starting tree, seed: 1431013786, score: 807060 [20:49:25] [worker #0] Generated a PARSIMONY starting tree, seed: 2143775286, score: 807528 [20:51:46] [worker #0] Generated a PARSIMONY starting tree, seed: 209179462, score: 807621 [20:54:06] [worker #0] Generated a PARSIMONY starting tree, seed: 130946095, score: 807799 [20:56:27] [worker #0] Generated a PARSIMONY starting tree, seed: 1200052133, score: 807346 [20:58:47] [worker #0] Generated a PARSIMONY starting tree, seed: 1304718150, score: 807499 [21:01:07] [worker #0] Generated a PARSIMONY starting tree, seed: 717205446, score: 808118 [21:03:27] [worker #0] Generated a PARSIMONY starting tree, seed: 2041784935, score: 807856 [21:05:48] [worker #0] Generated a PARSIMONY starting tree, seed: 1014286816, score: 807879 [21:08:08] [worker #0] Generated a PARSIMONY starting tree, seed: 590060816, score: 807855 [21:10:28] [worker #0] Generated a PARSIMONY starting tree, seed: 1822399368, score: 807526 [21:12:49] [worker #0] Generated a PARSIMONY starting tree, seed: 1142145073, score: 807706 [21:15:09] [worker #0] Generated a PARSIMONY starting tree, seed: 1710801356, score: 807094 [21:17:29] [worker #0] Generated a PARSIMONY starting tree, seed: 1713697403, score: 808274 [21:19:50] [worker #0] Generated a PARSIMONY starting tree, seed: 1758299178, score: 807980 [21:22:10] [worker #0] Generated a PARSIMONY starting tree, seed: 492653395, score: 808370 [21:24:30] [worker #0] Generated a PARSIMONY starting tree, seed: 1452047708, score: 807968 [21:26:51] [worker #0] Generated a PARSIMONY starting tree, seed: 200070607, score: 807630 [21:29:11] [worker #0] Generated a PARSIMONY starting tree, seed: 1032140452, score: 808021 [21:31:31] [worker #0] Generated a PARSIMONY starting tree, seed: 1106555354, score: 807764 [21:33:52] [worker #0] Generated a PARSIMONY starting tree, seed: 189039050, score: 807500 [21:36:12] [worker #0] Generated a PARSIMONY starting tree, seed: 1817783251, score: 808419 [21:38:33] [worker #0] Generated a PARSIMONY starting tree, seed: 697483941, score: 808058 [21:40:54] [worker #0] Generated a PARSIMONY starting tree, seed: 2020510726, score: 807412 [21:43:14] [worker #0] Generated a PARSIMONY starting tree, seed: 639725103, score: 808094 [21:45:31] [worker #0] Generated a PARSIMONY starting tree, seed: 1799292574, score: 808021 [21:47:51] [worker #0] Generated a PARSIMONY starting tree, seed: 1891447935, score: 808220 [21:47:52] Data distribution: max. searches per worker: 256 BARRIER time: 0.010025 ms Starting ML tree search with 12 distinct starting trees [21:48:04 -15985410.414645] Initial branch length optimization - after brlen: logLH = -13868892.949149 [21:55:03 -13868892.949149] Model parameter optimization (eps = 10.000000) - after rates: logLH = -13868892.949149 - after freqs: logLH = -13868892.949149 - after alpha: logLH = -13861627.620567 - after p-inv: logLH = -13861627.620567 - after freeR: logLH = -13861627.620567 - after brlen: logLH = -13861145.074668 Iteration 1: logLH = -13861145.074668 - after rates: logLH = -13861145.074668 - after freqs: logLH = -13861145.074668 - after alpha: logLH = -13861083.572035 - after p-inv: logLH = -13861083.572035 - after freeR: logLH = -13861083.572035 - after brlen: logLH = -13860923.367002 Iteration 2: logLH = -13860923.367002 - after rates: logLH = -13860923.367002 - after freqs: logLH = -13860923.367002 - after alpha: logLH = -13860893.986818 - after p-inv: logLH = -13860893.986818 - after freeR: logLH = -13860893.986818 - after brlen: logLH = -13860660.605591 Iteration 3: logLH = -13860660.605591 - after rates: logLH = -13860660.605591 - after freqs: logLH = -13860660.605591 - after alpha: logLH = -13860660.006886 - after p-inv: logLH = -13860660.006886 - after freeR: logLH = -13860660.006886 - after brlen: logLH = -13860607.356631 Iteration 4: logLH = -13860607.356631 - after rates: logLH = -13860607.356631 - after freqs: logLH = -13860607.356631 - after alpha: logLH = -13860606.488517 - after p-inv: logLH = -13860606.488517 - after freeR: logLH = -13860606.488517 - after brlen: logLH = -13860600.199442 Iteration 5: logLH = -13860600.199442 [22:09:08 -13860600.199442] SPR round 1 (radius: 4) [22:20:28 -10509454.284031] SPR round 2 (radius: 4) [22:31:43 -8571332.547050] SPR round 3 (radius: 4) [22:42:32 -7147976.122263] SPR round 4 (radius: 4) [22:53:03 -6233441.138821] SPR round 5 (radius: 4) [23:03:24 -5667803.521192] SPR round 6 (radius: 4) [23:13:40 -5161757.526818] SPR round 7 (radius: 4) [23:23:54 -4880253.780359] SPR round 8 (radius: 4) [23:34:06 -4661470.948307] SPR round 9 (radius: 4) [23:44:22 -4572259.552322] SPR round 10 (radius: 4) [23:53:46 -4528032.426254] SPR round 11 (radius: 8) [24:16:38 -4380782.333343] NNI round tolerance = 1.000000, epsilon = 10.000000 [25:05:19 -4262112.239186] SPR round 12 (radius: 8) [25:27:55 -4261279.457424] NNI round tolerance = 1.000000, epsilon = 10.000000 [25:44:04 -4260532.433376] SPR round 13 (radius: 12) [26:29:36 -4251316.008886] NNI round tolerance = 1.000000, epsilon = 10.000000 [26:49:35 -4248222.391691] SPR round 14 (radius: 16) [28:08:08 -4247394.318312] NNI round tolerance = 1.000000, epsilon = 10.000000 [28:20:02 -4241973.297256] SPR round 15 (radius: 16) [29:38:20 -4235666.173908] NNI round tolerance = 1.000000, epsilon = 10.000000 [30:10:11 -4234303.277456] SPR round 16 (radius: 16) [31:28:17 -4234303.266468] NNI round tolerance = 1.000000, epsilon = 10.000000 [31:32:19 -4234303.259716] Model parameter optimization (eps = 10.000000) - after rates: logLH = -4234303.259716 - after freqs: logLH = -4234303.259716 - after alpha: logLH = -4234256.870198 - after p-inv: logLH = -4234256.870198 - after freeR: logLH = -4234256.870198 - after brlen: logLH = -4234255.350692 Iteration 1: logLH = -4234255.350692 - after rates: logLH = -4234255.350692 - after freqs: logLH = -4234255.350692 - after alpha: logLH = -4234255.329907 - after p-inv: logLH = -4234255.329907 - after freeR: logLH = -4234255.329907 - after brlen: logLH = -4234254.195433 Iteration 2: logLH = -4234254.195433 [31:34:09 -4234254.195433] FAST spr round 1 (radius: 14) - after brlen: logLH = -4233964.673675 [32:55:22 -4233964.673675] FAST spr round 2 (radius: 14) - after brlen: logLH = -4233911.406287 [33:43:02 -4233911.406287] FAST spr round 3 (radius: 14) - after brlen: logLH = -4233911.393585 [34:12:37 -4233911.393585] Model parameter optimization (eps = 3.000000) - after rates: logLH = -4233911.393585 - after freqs: logLH = -4233911.393585 - after alpha: logLH = -4233905.964744 - after p-inv: logLH = -4233905.964744 - after freeR: logLH = -4233905.964744 - after brlen: logLH = -4233905.561823 Iteration 1: logLH = -4233905.561823 - after rates: logLH = -4233905.561823 - after freqs: logLH = -4233905.561823 - after alpha: logLH = -4233905.525020 - after p-inv: logLH = -4233905.525020 - after freeR: logLH = -4233905.525020 - after brlen: logLH = -4233905.110407 Iteration 2: logLH = -4233905.110407 [34:14:29 -4233905.110407] SLOW spr round 1 (radius: 4) - after brlen: logLH = -4233779.918227 [35:05:00 -4233779.918227] SLOW spr round 2 (radius: 4) - after brlen: logLH = -4233774.211682 [35:42:51 -4233774.211682] SLOW spr round 3 (radius: 8) [36:13:01 -4233774.130553] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4233772.235970 [36:21:17 -4233772.235970] SLOW spr round 4 (radius: 12) [37:23:33 -4233772.147842] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4233771.980402 [37:31:52 -4233771.980402] SLOW spr round 5 (radius: 16) [38:53:04] [worker #1] ML tree search #2, logLikelihood: -4206612.097344 [39:37:34 -4233771.932804] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4233771.869200 [39:41:54 -4233771.869200] Model parameter optimization (eps = 0.100000) - after rates: logLH = -4233771.869200 - after freqs: logLH = -4233771.869200 - after alpha: logLH = -4233756.755183 - after p-inv: logLH = -4233756.755183 - after freeR: logLH = -4233756.755183 - after brlen: logLH = -4233755.996241 Iteration 1: logLH = -4233755.996241 - after rates: logLH = -4233755.996241 - after freqs: logLH = -4233755.996241 - after alpha: logLH = -4233755.996241 - after p-inv: logLH = -4233755.996241 - after freeR: logLH = -4233755.996241 - after brlen: logLH = -4233755.953833 Iteration 2: logLH = -4233755.953833 [39:44:27] [worker #0] ML tree search #1, logLikelihood: -4233755.953833 [39:44:32 -16017512.155364] Initial branch length optimization - after brlen: logLH = -13936062.778688 [39:51:14 -13936062.778688] Model parameter optimization (eps = 10.000000) - after rates: logLH = -13936062.778688 - after freqs: logLH = -13936062.778688 - after alpha: logLH = -13928965.326582 - after p-inv: logLH = -13928965.326582 - after freeR: logLH = -13928965.326582 - after brlen: logLH = -13928441.426432 Iteration 1: logLH = -13928441.426432 - after rates: logLH = -13928441.426432 - after freqs: logLH = -13928441.426432 - after alpha: logLH = -13928428.146642 - after p-inv: logLH = -13928428.146642 - after freeR: logLH = -13928428.146642 - after brlen: logLH = -13928043.028340 Iteration 2: logLH = -13928043.028340 - after rates: logLH = -13928043.028340 - after freqs: logLH = -13928043.028340 - after alpha: logLH = -13927983.794853 - after p-inv: logLH = -13927983.794853 - after freeR: logLH = -13927983.794853 - after brlen: logLH = -13927941.311210 Iteration 3: logLH = -13927941.311210 - after rates: logLH = -13927941.311210 - after freqs: logLH = -13927941.311210 - after alpha: logLH = -13927940.852859 - after p-inv: logLH = -13927940.852859 - after freeR: logLH = -13927940.852859 - after brlen: logLH = -13927935.219650 Iteration 4: logLH = -13927935.219650 [40:01:23 -13927935.219650] SPR round 1 (radius: 4) [40:12:45 -10528106.274752] SPR round 2 (radius: 4) [40:23:44 -8495005.866951] SPR round 3 (radius: 4) [40:34:38 -7228386.743552] SPR round 4 (radius: 4) [40:45:23 -6305995.464416] SPR round 5 (radius: 4) [40:55:44 -5567224.992851] SPR round 6 (radius: 4) [41:05:56 -5041201.837755] SPR round 7 (radius: 4) [41:16:06 -4702642.938331] SPR round 8 (radius: 4) [41:26:17 -4519482.690058] SPR round 9 (radius: 4) [41:36:26 -4358740.313656] SPR round 10 (radius: 4) [41:46:36 -4272404.700449] SPR round 11 (radius: 4) [41:56:27 -4245878.407980] SPR round 12 (radius: 8) [42:19:02 -4240283.443761] NNI round tolerance = 1.000000, epsilon = 10.000000 [42:54:56 -4227778.778195] SPR round 13 (radius: 12) [43:40:37 -4227422.114981] NNI round tolerance = 1.000000, epsilon = 10.000000 [43:52:38 -4227361.501740] SPR round 14 (radius: 16) [45:13:21 -4222829.584650] NNI round tolerance = 1.000000, epsilon = 10.000000 [45:29:22 -4220270.267752] SPR round 15 (radius: 16) [46:49:02 -4220270.249531] NNI round tolerance = 1.000000, epsilon = 10.000000 [46:53:05 -4220270.237353] Model parameter optimization (eps = 10.000000) - after rates: logLH = -4220270.237353 - after freqs: logLH = -4220270.237353 - after alpha: logLH = -4220237.635579 - after p-inv: logLH = -4220237.635579 - after freeR: logLH = -4220237.635579 - after brlen: logLH = -4220235.647963 Iteration 1: logLH = -4220235.647963 - after rates: logLH = -4220235.647963 - after freqs: logLH = -4220235.647963 - after alpha: logLH = -4220235.590910 - after p-inv: logLH = -4220235.590910 - after freeR: logLH = -4220235.590910 - after brlen: logLH = -4220233.311944 Iteration 2: logLH = -4220233.311944 [46:54:54 -4220233.311944] FAST spr round 1 (radius: 14) - after brlen: logLH = -4220145.418549 [48:16:35 -4220145.418549] FAST spr round 2 (radius: 14) - after brlen: logLH = -4220137.747147 [49:04:09 -4220137.747147] Model parameter optimization (eps = 3.000000) - after rates: logLH = -4220137.747147 - after freqs: logLH = -4220137.747147 - after alpha: logLH = -4220135.118338 - after p-inv: logLH = -4220135.118338 - after freeR: logLH = -4220135.118338 - after brlen: logLH = -4220134.994744 Iteration 1: logLH = -4220134.994744 [49:05:00 -4220134.994744] SLOW spr round 1 (radius: 4) - after brlen: logLH = -4219925.178423 [49:55:24 -4219925.178423] SLOW spr round 2 (radius: 4) - after brlen: logLH = -4219904.017167 [50:34:49 -4219904.017167] SLOW spr round 3 (radius: 4) - after brlen: logLH = -4219903.989669 [51:06:13 -4219903.989669] SLOW spr round 4 (radius: 8) [51:34:31 -4219903.989275] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4219898.037135 [51:42:49 -4219898.037135] SLOW spr round 5 (radius: 12) [52:46:13 -4219897.941795] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4219897.820328 [52:50:31 -4219897.820328] SLOW spr round 6 (radius: 16) [54:57:06 -4219897.758860] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4219897.679928 [55:01:26 -4219897.679928] Model parameter optimization (eps = 0.100000) - after rates: logLH = -4219897.679928 - after freqs: logLH = -4219897.679928 - after alpha: logLH = -4219892.690847 - after p-inv: logLH = -4219892.690847 - after freeR: logLH = -4219892.690847 - after brlen: logLH = -4219885.942478 Iteration 1: logLH = -4219885.942478 - after rates: logLH = -4219885.942478 - after freqs: logLH = -4219885.942478 - after alpha: logLH = -4219885.153169 - after p-inv: logLH = -4219885.153169 - after freeR: logLH = -4219885.153169 - after brlen: logLH = -4219884.190723 Iteration 2: logLH = -4219884.190723 - after rates: logLH = -4219884.190723 - after freqs: logLH = -4219884.190723 - after alpha: logLH = -4219884.153148 - after p-inv: logLH = -4219884.153148 - after freeR: logLH = -4219884.153148 - after brlen: logLH = -4219884.090289 Iteration 3: logLH = -4219884.090289 - after rates: logLH = -4219884.090289 - after freqs: logLH = -4219884.090289 - after alpha: logLH = -4219884.090289 - after p-inv: logLH = -4219884.090289 - after freeR: logLH = -4219884.090289 - after brlen: logLH = -4219884.046531 Iteration 4: logLH = -4219884.046531 [55:07:43] [worker #0] ML tree search #3, logLikelihood: -4219884.046531 [55:07:46 -4737646.389694] Initial branch length optimization - after brlen: logLH = -4217997.313028 [55:12:40 -4217997.313028] Model parameter optimization (eps = 10.000000) - after rates: logLH = -4217997.313028 - after freqs: logLH = -4217997.313028 - after alpha: logLH = -4217266.647885 - after p-inv: logLH = -4217266.647885 - after freeR: logLH = -4217266.647885 - after brlen: logLH = -4217257.481219 Iteration 1: logLH = -4217257.481219 - after rates: logLH = -4217257.481219 - after freqs: logLH = -4217257.481219 - after alpha: logLH = -4217257.422564 - after p-inv: logLH = -4217257.422564 - after freeR: logLH = -4217257.422564 - after brlen: logLH = -4217250.697094 Iteration 2: logLH = -4217250.697094 [55:14:29 -4217250.697094] SPR round 1 (radius: 4) [55:23:14 -4209531.802483] SPR round 2 (radius: 8) [55:46:34 -4209182.106716] NNI round tolerance = 1.000000, epsilon = 10.000000 [56:02:28 -4207162.812734] SPR round 3 (radius: 12) [56:47:33 -4207162.690646] NNI round tolerance = 1.000000, epsilon = 10.000000 [56:55:33 -4207162.577125] Model parameter optimization (eps = 10.000000) - after rates: logLH = -4207162.577125 - after freqs: logLH = -4207162.577125 - after alpha: logLH = -4207162.049841 - after p-inv: logLH = -4207162.049841 - after freeR: logLH = -4207162.049841 - after brlen: logLH = -4207162.019145 Iteration 1: logLH = -4207162.019145 [56:56:21 -4207162.019145] FAST spr round 1 (radius: 14) - after brlen: logLH = -4207094.415787 [58:12:38 -4207094.415787] FAST spr round 2 (radius: 14) - after brlen: logLH = -4207091.737269 [58:57:52 -4207091.737269] Model parameter optimization (eps = 3.000000) - after rates: logLH = -4207091.737269 - after freqs: logLH = -4207091.737269 - after alpha: logLH = -4207091.737269 - after p-inv: logLH = -4207091.737269 - after freeR: logLH = -4207091.737269 - after brlen: logLH = -4207091.736543 Iteration 1: logLH = -4207091.736543 [58:58:39 -4207091.736543] SLOW spr round 1 (radius: 4) [59:09:59] [worker #1] ML tree search #4, logLikelihood: -4206744.829461 - after brlen: logLH = -4206879.911058 [59:47:53 -4206879.911058] SLOW spr round 2 (radius: 4) - after brlen: logLH = -4206875.817022 [60:24:04 -4206875.817022] SLOW spr round 3 (radius: 8) [60:54:59 -4206875.814138] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4206874.896154 [61:03:14 -4206874.896154] SLOW spr round 4 (radius: 12) [62:05:29 -4206874.895169] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4206874.894437 [62:09:46 -4206874.894437] SLOW spr round 5 (radius: 16) [64:15:45 -4206874.894283] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4206874.894167 [64:20:01 -4206874.894167] Model parameter optimization (eps = 0.100000) - after rates: logLH = -4206874.894167 - after freqs: logLH = -4206874.894167 - after alpha: logLH = -4206874.474897 - after p-inv: logLH = -4206874.474897 - after freeR: logLH = -4206874.474897 - after brlen: logLH = -4206874.471203 Iteration 1: logLH = -4206874.471203 - after rates: logLH = -4206874.471203 - after freqs: logLH = -4206874.471203 - after alpha: logLH = -4206874.470027 - after p-inv: logLH = -4206874.470027 - after freeR: logLH = -4206874.470027 - after brlen: logLH = -4206874.469619 Iteration 2: logLH = -4206874.469619 [64:21:35] [worker #0] ML tree search #5, logLikelihood: -4206874.469619 [64:21:39 -4738553.438940] Initial branch length optimization - after brlen: logLH = -4218546.805186 [64:25:22 -4218546.805186] Model parameter optimization (eps = 10.000000) - after rates: logLH = -4218546.805186 - after freqs: logLH = -4218546.805186 - after alpha: logLH = -4217841.963856 - after p-inv: logLH = -4217841.963856 - after freeR: logLH = -4217841.963856 - after brlen: logLH = -4217835.913801 Iteration 1: logLH = -4217835.913801 - after rates: logLH = -4217835.913801 - after freqs: logLH = -4217835.913801 - after alpha: logLH = -4217835.908665 - after p-inv: logLH = -4217835.908665 - after freeR: logLH = -4217835.908665 - after brlen: logLH = -4217834.495482 Iteration 2: logLH = -4217834.495482 [64:27:17 -4217834.495482] SPR round 1 (radius: 4) [64:36:02 -4208860.136315] SPR round 2 (radius: 8) [64:58:49 -4208649.052471] NNI round tolerance = 1.000000, epsilon = 10.000000 [65:10:53 -4207279.077140] SPR round 3 (radius: 12) [65:56:55 -4207277.170153] NNI round tolerance = 1.000000, epsilon = 10.000000 [66:04:58 -4207274.872310] Model parameter optimization (eps = 10.000000) - after rates: logLH = -4207274.872310 - after freqs: logLH = -4207274.872310 - after alpha: logLH = -4207272.450547 - after p-inv: logLH = -4207272.450547 - after freeR: logLH = -4207272.450547 - after brlen: logLH = -4207271.924365 Iteration 1: logLH = -4207271.924365 [66:05:46 -4207271.924365] FAST spr round 1 (radius: 14) - after brlen: logLH = -4206974.394552 [67:24:58 -4206974.394552] FAST spr round 2 (radius: 14) - after brlen: logLH = -4206974.394296 [68:10:09 -4206974.394296] Model parameter optimization (eps = 3.000000) - after rates: logLH = -4206974.394296 - after freqs: logLH = -4206974.394296 - after alpha: logLH = -4206974.368951 - after p-inv: logLH = -4206974.368951 - after freeR: logLH = -4206974.368951 - after brlen: logLH = -4206974.368733 Iteration 1: logLH = -4206974.368733 [68:10:57 -4206974.368733] SLOW spr round 1 (radius: 4) - after brlen: logLH = -4206893.943551 [68:58:05 -4206893.943551] SLOW spr round 2 (radius: 4) - after brlen: logLH = -4206872.150721 [69:34:47 -4206872.150721] SLOW spr round 3 (radius: 4) - after brlen: logLH = -4206872.149252 [70:06:00 -4206872.149252] SLOW spr round 4 (radius: 8) [70:34:37 -4206870.160344] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4206869.838945 [70:42:52 -4206869.838945] SLOW spr round 5 (radius: 12) [70:44:06] [worker #1] ML tree search #6, logLikelihood: -4206855.866988 [71:47:47 -4206869.836147] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4206869.832085 [71:52:04 -4206869.832085] SLOW spr round 6 (radius: 16) [73:59:45 -4206869.831771] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4206869.831320 [74:04:01 -4206869.831320] Model parameter optimization (eps = 0.100000) - after rates: logLH = -4206869.831320 - after freqs: logLH = -4206869.831320 - after alpha: logLH = -4206869.768121 - after p-inv: logLH = -4206869.768121 - after freeR: logLH = -4206869.768121 - after brlen: logLH = -4206869.767151 Iteration 1: logLH = -4206869.767151 [74:04:50] [worker #0] ML tree search #7, logLikelihood: -4206869.767151 [74:04:54 -4737281.403590] Initial branch length optimization - after brlen: logLH = -4217587.527462 [74:09:47 -4217587.527462] Model parameter optimization (eps = 10.000000) - after rates: logLH = -4217587.527462 - after freqs: logLH = -4217587.527462 - after alpha: logLH = -4216834.247157 - after p-inv: logLH = -4216834.247157 - after freeR: logLH = -4216834.247157 - after brlen: logLH = -4216827.851925 Iteration 1: logLH = -4216827.851925 - after rates: logLH = -4216827.851925 - after freqs: logLH = -4216827.851925 - after alpha: logLH = -4216827.843747 - after p-inv: logLH = -4216827.843747 - after freeR: logLH = -4216827.843747 - after brlen: logLH = -4216824.901129 Iteration 2: logLH = -4216824.901129 [74:11:38 -4216824.901129] SPR round 1 (radius: 4) [74:20:21 -4209536.406310] SPR round 2 (radius: 8) [74:42:57 -4208703.771898] NNI round tolerance = 1.000000, epsilon = 10.000000 [75:06:52 -4207211.738990] SPR round 3 (radius: 12) [75:52:05 -4207211.010160] NNI round tolerance = 1.000000, epsilon = 10.000000 [76:00:05 -4207210.279487] Model parameter optimization (eps = 10.000000) - after rates: logLH = -4207210.279487 - after freqs: logLH = -4207210.279487 - after alpha: logLH = -4207210.248704 - after p-inv: logLH = -4207210.248704 - after freeR: logLH = -4207210.248704 - after brlen: logLH = -4207210.053088 Iteration 1: logLH = -4207210.053088 [76:00:53 -4207210.053088] FAST spr round 1 (radius: 14) - after brlen: logLH = -4207105.153666 [77:19:18 -4207105.153666] FAST spr round 2 (radius: 14) - after brlen: logLH = -4207069.406648 [78:05:56 -4207069.406648] FAST spr round 3 (radius: 14) - after brlen: logLH = -4207069.384181 [78:35:36 -4207069.384181] Model parameter optimization (eps = 3.000000) - after rates: logLH = -4207069.384181 - after freqs: logLH = -4207069.384181 - after alpha: logLH = -4207069.300230 - after p-inv: logLH = -4207069.300230 - after freeR: logLH = -4207069.300230 - after brlen: logLH = -4207069.299020 Iteration 1: logLH = -4207069.299020 [78:36:24 -4207069.299020] SLOW spr round 1 (radius: 4) - after brlen: logLH = -4206823.150258 [79:26:41 -4206823.150258] SLOW spr round 2 (radius: 4) - after brlen: logLH = -4206766.940096 [80:04:04 -4206766.940096] SLOW spr round 3 (radius: 4) - after brlen: logLH = -4206766.937865 [80:35:00 -4206766.937865] SLOW spr round 4 (radius: 8) [81:03:20 -4206766.937846] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4206759.183781 [81:15:27 -4206759.183781] SLOW spr round 5 (radius: 12) [81:40:44] [worker #1] ML tree search #8, logLikelihood: -4206736.221460 [82:19:22 -4206759.183121] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4206759.182347 [82:31:30 -4206759.182347] SLOW spr round 6 (radius: 16) [84:37:16 -4206759.182295] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4206759.182240 [84:45:27 -4206759.182240] Model parameter optimization (eps = 0.100000) - after rates: logLH = -4206759.182240 - after freqs: logLH = -4206759.182240 - after alpha: logLH = -4206758.795149 - after p-inv: logLH = -4206758.795149 - after freeR: logLH = -4206758.795149 - after brlen: logLH = -4206758.791569 Iteration 1: logLH = -4206758.791569 - after rates: logLH = -4206758.791569 - after freqs: logLH = -4206758.791569 - after alpha: logLH = -4206758.791569 - after p-inv: logLH = -4206758.791569 - after freeR: logLH = -4206758.791569 - after brlen: logLH = -4206758.791307 Iteration 2: logLH = -4206758.791307 [84:46:59] [worker #0] ML tree search #9, logLikelihood: -4206758.791307 [84:47:02 -4738699.963929] Initial branch length optimization - after brlen: logLH = -4218754.338922 [84:51:01 -4218754.338922] Model parameter optimization (eps = 10.000000) - after rates: logLH = -4218754.338922 - after freqs: logLH = -4218754.338922 - after alpha: logLH = -4218004.440214 - after p-inv: logLH = -4218004.440214 - after freeR: logLH = -4218004.440214 - after brlen: logLH = -4217994.770663 Iteration 1: logLH = -4217994.770663 - after rates: logLH = -4217994.770663 - after freqs: logLH = -4217994.770663 - after alpha: logLH = -4217994.770663 - after p-inv: logLH = -4217994.770663 - after freeR: logLH = -4217994.770663 - after brlen: logLH = -4217988.017967 Iteration 2: logLH = -4217988.017967 [84:52:53 -4217988.017967] SPR round 1 (radius: 4) [85:01:41 -4209292.657522] SPR round 2 (radius: 8) [85:25:07 -4208726.400482] NNI round tolerance = 1.000000, epsilon = 10.000000 [85:45:14 -4207239.562836] SPR round 3 (radius: 12) [86:31:08 -4207189.391638] NNI round tolerance = 1.000000, epsilon = 10.000000 [86:43:16 -4207121.741106] SPR round 4 (radius: 16) [88:06:54 -4207110.983809] NNI round tolerance = 1.000000, epsilon = 10.000000 [88:14:56 -4207096.293044] SPR round 5 (radius: 16) [89:39:45 -4207096.208871] NNI round tolerance = 1.000000, epsilon = 10.000000 [89:47:47 -4207096.008825] Model parameter optimization (eps = 10.000000) - after rates: logLH = -4207096.008825 - after freqs: logLH = -4207096.008825 - after alpha: logLH = -4207093.587938 - after p-inv: logLH = -4207093.587938 - after freeR: logLH = -4207093.587938 - after brlen: logLH = -4207093.521452 Iteration 1: logLH = -4207093.521452 [89:48:35 -4207093.521452] FAST spr round 1 (radius: 14) - after brlen: logLH = -4206939.982207 [91:08:24 -4206939.982207] FAST spr round 2 (radius: 14) - after brlen: logLH = -4206939.979124 [91:54:31 -4206939.979124] Model parameter optimization (eps = 3.000000) - after rates: logLH = -4206939.979124 - after freqs: logLH = -4206939.979124 - after alpha: logLH = -4206939.977847 - after p-inv: logLH = -4206939.977847 - after freeR: logLH = -4206939.977847 - after brlen: logLH = -4206939.977331 Iteration 1: logLH = -4206939.977331 [91:55:17 -4206939.977331] SLOW spr round 1 (radius: 4) - after brlen: logLH = -4206789.124643 [92:43:55 -4206789.124643] SLOW spr round 2 (radius: 4) - after brlen: logLH = -4206733.081381 [93:20:59 -4206733.081381] SLOW spr round 3 (radius: 4) [93:28:28] [worker #1] ML tree search #10, logLikelihood: -4206624.250602 - after brlen: logLH = -4206733.076623 [93:52:06 -4206733.076623] SLOW spr round 4 (radius: 8) [94:21:50 -4206647.876203] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4206644.723925 [94:34:00 -4206644.723925] SLOW spr round 5 (radius: 8) [95:25:55 -4206637.941002] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4206637.573929 [95:30:12 -4206637.573929] SLOW spr round 6 (radius: 12) [96:31:43 -4206637.572471] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4206637.571430 [96:36:00 -4206637.571430] SLOW spr round 7 (radius: 16) [98:45:54 -4206637.571208] NNI round tolerance = 1.000000, epsilon = 10.000000 - after brlen: logLH = -4206637.571042 [98:50:10 -4206637.571042] Model parameter optimization (eps = 0.100000) - after rates: logLH = -4206637.571042 - after freqs: logLH = -4206637.571042 - after alpha: logLH = -4206637.534157 - after p-inv: logLH = -4206637.534157 - after freeR: logLH = -4206637.534157 - after brlen: logLH = -4206637.533675 Iteration 1: logLH = -4206637.533675 [98:50:58] [worker #0] ML tree search #11, logLikelihood: -4206637.533675 [103:30:29] [worker #1] ML tree search #12, logLikelihood: -4206801.503160 [103:30:29] ML tree search completed, best tree logLH: -4206612.097344 [103:30:29] Starting bootstrapping analysis with 500 replicates.